Friday, 20 April 2018

The periwinkle's deadly secret


Figure 1: The vinca alkaloid vincristine from the periwinkle Catharanthus roseus.

Periwinkle, the common ornamental plant, is highly toxic because of the chemical compounds it contains. One of these compounds is called vincristine - a compound that can prevent mammalian cells from dividing. This compound contains nitrogen atoms, making it an alkaloid. Vincristine and its sibling alkaloid, vinblastine, both inhibit cell division which makes them effective chemotheraputics. They are used to treat several types of cancer. For the plant, these compounds constitute a defense mechanism: if eaten in quantity, periwinkle leaves are highly toxic. So, even though the periwinkle is a pretty plant to look at - it's not good to eat!


Friday, 13 April 2018

Limonene - oil from citrus peels


Figure 1: Orange peels and limonene. The peels of oranges contain oil. This oil is mostly made up of limonene. On the right: D- and L- limonene; mirror images of each other, but with very different properties.

Have you ever used a citrus degreaser? How does that stuff work? It turns out that the peels of citrus plants contain oil! Not the slimy black stuff that comes from million-year-old compressed algae, but a much fruitier substance. The majority (~90%) of orange peel oil is made up of a compound called limonene. This compound has a duality to its nature that is very important. Think about hands: there are left hands and right hands, which, though they are made of the same parts (four fingers, a thumb, and a palm), are not identical. Rather, hards are mirror images of each other. Limonene is just the same – there is a “left” limonene and a “right” limonene. In chemical language, these are called D-limonene and L-limonene. Our noses are particularly tuned to the difference between these two: D-limonene smells like citrus, while L-limonene smells like pine or turpentine. Limonene is used extensively in the perfume industry, as a component of degreasers, as a natural insect and pest deterrent, and even as a building block for renewable, biodegradable plastics [1]. Fantastic!


[1] Alternating Copolymerization of Limonene Oxide and Carbon Dioxide. Christopher M. Byrne, Scott D. Allen, Emil B. Lobkovsky, and Geoffrey W. Coates*. Journal of the American Chemical Society 2004 126 (37), 11404-11405 https://pubs.acs.org/doi/abs/10.1021/ja0472580.

Friday, 6 April 2018

Nightshade


Figure 1: Mandragora roots (artist's rendition). The roots of Mandragora species contain hyoscyamine and scopolamine, tropane alkaloids with similar structures, but very different psychoactive effects.


Nightshade. The name conjures fear in many of us… but why? The nightshade family of plants is also called the Solanaceae. Some members of this family produce chemical compounds that are psychoactive in humans (though other members of the Solanaceae are important domesticated food crops, i.e. tomatoes, potatoes, eggplants, etc.). One member of the nightshade family is the Mandragora genus. These plants are also called mandrakes, and truly have roots that look like small humans. Alcoholic extracts from these plants contain hyoscyamine and scopolamine. Hyoscyamine is a central nervous system stimulant, but scopolamine (which differs only in that it contains an additional oxygen atom), is a central nervous system depressant. Plants containing these two compounds have been used for centuries as drugs, poisons, and aphrodisiacs - they appear in Homer’s Odyssey and works by Shakespeare. What would these icons have thought if they had known the uniqueness of these two compounds to the nightshade family and the subtleties of their structures and functions?

Thursday, 15 February 2018

Arsenic can't kill this fern!

Have you ever seen the greenish hue of treated lumber and wondered what it was? In some cases this color comes from chromated copper arsenate, which has been used since the 1930s as a wood preservative. While this preservative has been studied extensively and appears to be safe, the process by which it is applied can lead to arsenic-contaminated soils. Dr. Lena Ma of the University of Florida was walking around a disused wood treatment site one day when she notice a particular species of fern growing all around the site. By bringing some fronds (a fern's leaves) to the lab, she discovered that this fern, Pteris vittata (Figure 1), is able to accumulate 200 times more arsenic than is present in the surrounding soil! This was an incredible finding, because arsenic is very famous for being lethal to living organisms.
Figure 1: Pteris vittata. This fern sucks arsenic out of the soil (or walls!) in which it grows and can hyper accumulate the arsenic in its fronds (leaves).


Arsenic is a quasi-metal substance called a metalloid, meaning that it exhibits some metal-like properties (it can form alloys with other metals), but also some properties of non-metals (it is brittle). It is also chemically similar to phosphorous, an element that is a component in many important components of all of Earth's organisms, such as DNA and RNA. Since arsenic is similar to phosphorous (it is in the same column in the periodic table), it can sneak into living organisms through phosphorous transporters, then interfere with all the essential cellular processes that require phosphorous. It is this interference that makes arsenic so toxic, and why the ability of the Pteris ferns to hyper-accumulate arsenic so amazing.

Intrigued by this arsenic-tolerant fern, Dr. Ma and her colleagues carried out further research on Pteris vittata. They soon found that when this fern grows in healthy soils it does not have such high levels of arsenic, but if arsenic is added the fern rapidly absorbs the arsenic through its roots and stores it in its fronds. After further study, scientists discovered that these ferns seem to have new versions of phosphorous transporters that, instead of moving phosphorous, can selectively move arsenic and quarantine this metal in a special plant cell storage container called the vacuole. It seems likely that this fern does this to poison any animals or insects that attempt to eat it.

Naturally, Pteris vittata (and its relatives that also hyper-accumulate arsenic) have great potential in bioremediation - the use of biological organisms to clean up a polluted environment. Perhaps these ferns could be grown in poisoned landscapes to soak up the arsenic and then be removed and disposed of safely. This is important for all humans since arsenic in soils makes its way into our food and water, causing illness, cancer, and death in high doses. Efforts are underway to see whether what we have learned about Pteris arsenic tolerance can be applied to creating crops that will be able to prevent arsenic from entering their roots via phosphorous channels, thereby reducing the amount of arsenic in our diets. It is fantastic to learn such an important biological tactic from a fern. Ferns have been on earth longer than all animals and insects, and have clearly developed some tricks during this period - only time will tell what other wisdom they may share with us.

For more, see: https://www.nature.com/articles/35054664 http://www.nature.com/news/2004/040512/full/news040510-4.html

Thursday, 28 December 2017

The poinsettia's wild family

Did you know that decorative red poinsettias are related to a plant whose sap can cause allergic reactions on contact? The common poinsettia, Euphorbia pulcherrima (a native Mexican plant, Figure 1), belongs to a family of plants called the Euphorbaceae (you-forb-AY-see-ay; it's fun to say isn't it?). Even though the poinsettia is a rather common plant, many of its brother and sister species are quite exotic - some resemble cacti or tropical plants. Others are of incredible economic importance, including the staple crop cassava (Manihot esculenta) and the castor oil plant (Ricinus communis - yes, the source of the protein called ricin that was used as a poison in Breaking Bad).
Figure 1: A poinsettia. Did you know that those poinsettias that look so nice during the holiday season are related to a plant whose sap can cause allergic reactions on contact?


Among all the famous members of the Euphorbaceae family is a lesser-known cousin called Euphorbia marginata (Figure 2), also known as Snow-on-the-mountain, and sometimes confused with other parsley-like species as described on the Kansas Wildlife Federation page [1]. This plant, like its relatives, contains a white sap inside its stems (kind of like a dandelion). However, the milky-white latex of the Snow-on-the-mountain flower can be highly allergenic to sensitive individuals. This property made it famous when it was widely publicized for interfering in a wedding after the bride transferred some of the plant's sap from its freshly cut stems to her eyes, landing her in the ER on her wedding day [2].

Figure 2: Euphorbia marginata. Also called "Snow-on-the-mountain".
Even now, I sit here next to a poinsettia, cousin to a wedding-destroyer, a TV poison star, and a feeder of millions. If you see a poinsettia this holiday season, I hope it reminds you of the incredible properties that belong to even just a small family of plants. Fantastic!


[1] http://kswildlife.org/ww/snow-on-the-mountain-a-kansas-beauty-that-is-also-dangerous/
[2] http://www.omaha.com/living/allergic-reaction-to-flowers-sent-bride-on-a-wedding-day/article_21cec2fe-d9ef-11e7-a9b6-0beeaf93f6f4.html

Thursday, 23 November 2017

The chemistry of aromas: a Plants Are Chemists interview with V.S. Pragdheesh

What do a grape candy, an industrial bird repellant, and perfume all have in common? They are all derived from plants of course! Many of the molecules that go into these products are chemicals that plants make and release into the air around them (think lavender, Figure 1A). These airborne molecules are called volatiles [vall-a-tyles]. To discuss them in this month’s post we interview an expert: V.S. Pragadheesh (Figure 1B), a chemical ecologist (a researcher who studies how chemicals made by living things play roles in ecosystems) at the National Centre for Biological Sciences in Bangalore, India.

Figure 1: A source of plant volatiles you may be familiar with, and this weeks interviewee. A) That lavender smell? Chemicals made by the plant that are released into the air and enter your nose - these are plant volatiles! B) This week’s interviewee - V.S. Pragadheesh from the National Centre for Biological Sciences in Bangalore, India.
Plants are Chemists: So, you study “plant volatiles” - what are those exactly?

V.S. Pragadheesh: There is an old saying that “a flower shop does not need an advertisement”. This is because we recognize flowers simply by their smell! Aroma, or fragrance, is created by chemical compounds which very easily escape from the liquid state (even from the solid state sometimes) into the vapor state - and that’s how they reach us. Chemicals with this ability are called volatiles. Plants produce a huge diversity of such volatile compounds which are called “plant volatiles”.

Plants are Chemists: As humans, how do we experience these airborne volatiles?

V.S. Pragadheesh: A great example to know how we experience these airborne volatiles is food. Whether it’s buttered popcorn, or a masala dosa, or a pizza, or whatever, every dish has some smell. Some volatile compounds in the dish escape from the food and reach our nose through the air. These specialized compounds activate our smell receptors (present in the nose) and these receptors send the signal to the brain through neurons.  The brain combines the signals from different neurons and makes a signature for the dish in our brain as a particular smell. The brain even combines these smell signals with taste signals to create a characteristic flavour.

Plants are Chemists: Very cool! I know that many of the volatiles used in industry are synthesized in large chemical reactors - but where did scientists discover these compounds in the first place?

V.S. Pragadheesh: These compounds are identified mostly from plants! Plants biosynthesize these volatile chemicals to adapt themselves to various biotic (living) and abiotic (non-living) stresses of different environments.  The pleasant smell of rose, the earthy smell of vetiver, the fruity smell of an apple or mango are olfactorily pleasant to humans, but they have several roles in plant biology such as pollinator attractants (Figure 2, left), defensive compounds (Figure 2, middle), mutualist attractants, indicators for seed dispersal (Figure 2, right), and many other unknown functions.
Figure 2: Some functions of plant volatiles. Left: volatiles can attract pollinators; Center: plant volatiles can kill insects that damage plants; Right: plants can signal to one another to synchronize seed maturation and the attraction of seed dispersal agents (birds, mammals, etc.)
Plants are Chemists: Can you explain a little more about how plants utilize these volatiles as a signal for their benefit?

V.S. Pragadheesh: Of course. For instance, it is to a plant’s advantage to only allow its seeds to be dispersed once the seeds have reached maturity. That is why unripe fruits (which contain immature seeds) have a strong, acidic odor that repels most seed dispersing agents (birds, mammals, etc.). During ripening, the acids present in the unripe fruits are converted to more volatile chemicals called esters, which impart the fruit with a fresh, ripe scent. This is why a ripe fruit smells better than an unripe one. The smell of ripe fruits attracts birds and mammals to eat the fruit and disperse the seeds at the complete maturity of its seeds.

Plants are Chemists: Can you give us an example of a plant volatile that we might be familiar with?

V.S. Pragadheesh: One common volatile is an ester present in flavours like grape, apple, and citrus. It is called methyl anthranilate (Figure 3). Methyl anthranilate is also found in many flower fragrances such as jasmine, tuberose, lemon, champak, etc. It is also the characteristic flavor of grape candy.

Fig. 3. Methyl anthranilate. This molecule is made up of a carbon ring (black) with a nitrogen atom (blue) attached, as well as two oxygens (red). It is found in many fruits and flowers, has a distinct “grape” flavor, and repels birds.
Plants are Chemists: Interesting! So, what plants make methyl anthranilate and why do they bother to make it anyway?

V.S. Pragadheesh: Corn and grapes are two common species that make methyl anthranilate. Due to its unpalatable nature to birds, methyl anthranilate acts as a defensive compound for plants to protect themselves from birds.

Plants are Chemists: Corn and grapes are two very different plants - one is a vine and the other is in the grass family. If such different plants can both make methyl anthranilate, does that mean that all plants can?

V.S. Pragadheesh: Well, the easy answer is no, not all plants have this ability. There is also a slightly more complicated answer as well - which has to do with the fact that corn and grapes each make methyl anthranilate in a different way. Maize and grapes use different biosynthetic pathways to produce methyl anthranilate. These two plants use different substrates and different enzymes to produce the same compound, methyl anthranilate. This phenomenon is called convergent evolution. It is easy to explain convergent evolution with a common example like flight. Flight has evolved in insects, mammals (bats), and birds: the same trait (flight) evolved in several different classes of organisms.  Convergent evolution onto methyl anthranilate in maize and grapes also a similar process.

Plants are Chemists: Wow, that is incredible! So, is methyl anthranilate the only technique to deter birds?

V.S. Pragadheesh: Pin wheels, streamers, reflective art, owl, and cat figures are some classical techniques to deter birds, and while these might work sometimes, a pretty good alternative is synthetic methyl anthranilate. Unlike other chemicals, methyl anthranilate specifically deters birds and can be used to protect diverse crops. Further, it is a food grade chemical - safe for human consumption as it is made by many other plants we already eat.

Plants are Chemists: Very nice. Do you have any last comments before we end the interview?

V.S. Pragadheesh: Next time when you smell a flower or plant, appreciate the interesting chemistry in it. The plant is communicating with the environment around it by transferring the chemical information. Chemicals are the language of nature and plants are the best chemists! It is very interesting to talk to you, Luke. Thank you very much.


For more information, see:
[1] Pichersky, E., Noel, J.P. and Dudareva, N. (2006) Biosynthesis of plant volatiles: Nature’s diversity and ingenuity. Science, 311, 808-811.
[2] Pichersky, E. and Lewinsohn, E. (2011) Convergent evolution in plant specialized metabolism. Annu. Rev. Plant Biol., 62, 549–66.
[3] Cummings, J.L., Mason, J.R., Otis, D.L., Heisterberg, J.F. (1991) Evaluation of dimethyl and methyl anthranilate as a canada goose repellent on grass. Wildi. Soc. Bull. 19, 184-190.

Sunday, 17 September 2017

Root Chemistry Infographic

This month, I thought a new format of exploring plant chemistry would be fun. I hope you enjoy this infographic on plant root chemistry! Please feel free to share it or use it for whatever purposes you like. If you are interested in creating your own infographics, please consider flaticon.com, a great resource for vector graphics, and Inkscape (https://inkscape.org/en/), a free program for vector graphic manipulation. -Luke